Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs12879564 chr14:56017694 A/G 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs12879705 chr14:56017684 C/G 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs12880362 chr14:56017929 G/C 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs12883972 chr14:56018020 A/G 7.18E-9 366 18.83 26.63 1.13 KM Plot
LIHC rs12886406 chr14:56027605 G/A 1.04E-8 360 18.83 28.27 1.13 KM Plot
LIHC rs12894368 chr14:56025178 C/A 8.58E-9 366 18.87 27.45 1.13 KM Plot
LIHC rs12934261 chr16:1504215 G/A 8.99E-15 363 19.15 23.23 1.38 KM Plot
LIHC rs13012457 chr2:158938786 T/C 5.17E-6 358 21.02 13.6 9.07 KM Plot
LIHC rs13027958 chr2:37057021 T/C 4.45E-6 366 8.73 13.2 20.6 KM Plot
LIHC rs13070354 chr3:7941370 T/C 1.87E-7 368 19.13 24.43 3.03 KM Plot
LIHC rs13155119 chr5:145642007 T/C 1.75E-5 358 19.5 21.32 10.5 KM Plot
LIHC rs13177001 chr5:26046739 A/G 1.66E-5 364 19.33 21.3 1.03 KM Plot
LIHC rs13229374 chr7:90298008 G/A 2.22E-5 362 14.32 19.42 20.78 KM Plot
LIHC rs1330656 chr5:26048462 G/T 1.68E-5 364 19.5 20.65 1.03 KM Plot
LIHC rs13385627 chr2:37150215 G/T 1.69E-5 364 20.45 12.17 8.73 KM Plot